SMTL ID : 4nzg.1 (2 other biounits)

Crystal Structure of the N-terminal domain of Moloney murine leukemia virus integrase, Northeast Structural Genomics Consortium Target OR3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.52, H.56, C.89, C.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.52, A:H.56, A:C.89, A:C.92 ZN.6: 4 residues within 4Å: Chain B: H.52, H.56, C.89, C.92 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.52, B:H.56, B:C.89, B:C.92 ZN.11: 4 residues within 4Å: Chain C: H.52, H.56, C.89, C.92 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.52, C:H.56, C:C.89, C:C.92 ZN.16: 4 residues within 4Å: Chain D: H.52, H.56, C.89, C.92 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.52, D:H.56, D:C.89, D:C.92

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 1 residues within 4Å: Chain A: F.45 No protein-ligand interaction detected (PLIP) ACT.7: 4 residues within 4Å: Chain B: E.87, T.88, K.90, A.93 No protein-ligand interaction detected (PLIP) ACT.14: 3 residues within 4Å: Chain A: Q.94 Chain D: E.46, F.50 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Q.94

9 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.3: 3 residues within 4Å: Chain A: L.51 Chain C: L.65 Ligands: DTT.12 No protein-ligand interaction detected (PLIP) DTT.4: 4 residues within 4Å: Chain A: L.65, S.69 Chain C: L.47 Ligands: DTT.5 No protein-ligand interaction detected (PLIP) DTT.5: 6 residues within 4Å: Chain A: R.68, S.69, H.70 Chain C: L.47, M.75 Ligands: DTT.4 No protein-ligand interaction detected (PLIP) DTT.8: 4 residues within 4Å: Chain B: L.65, S.69 Chain D: L.47, L.51 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.65 DTT.9: 5 residues within 4Å: Chain B: F.43, E.46, L.47 Chain C: Q.94 Chain D: R.68 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.46 DTT.10: 3 residues within 4Å: Chain B: K.90, Q.94 Chain C: E.46 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.90 DTT.12: 4 residues within 4Å: Chain A: L.47 Chain C: S.69, H.70 Ligands: DTT.3 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.69 DTT.13: 6 residues within 4Å: Chain C: S.58, S.60, K.61 Chain D: S.58, S.60, K.61 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:S.58, C:K.61, D:S.58, D:K.61 DTT.15: 2 residues within 4Å: Chain B: L.47 Chain D: L.65 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:L.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guan, R. et al., X-ray crystal structure of the N-terminal region of Moloney murine leukemia virus integrase and its implications for viral DNA recognition. Proteins (2017)

Release Date

2014-02-05

Peptides

Integrase p46: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Integrase p46

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