SMTL ID : 4nzg.2 (2 other biounits)

Crystal Structure of the N-terminal domain of Moloney murine leukemia virus integrase, Northeast Structural Genomics Consortium Target OR3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.52, H.56, C.89, C.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.52, A:H.56, A:C.89, A:C.92 ZN.6: 4 residues within 4Å: Chain B: H.52, H.56, C.89, C.92 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.52, B:H.56, B:C.89, B:C.92

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 1 residues within 4Å: Chain A: F.45 No protein-ligand interaction detected (PLIP)

5 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.3: 3 residues within 4Å: Chain A: L.51 Chain B: L.65 Ligands: DTT.7 No protein-ligand interaction detected (PLIP) DTT.4: 4 residues within 4Å: Chain A: L.65, S.69 Chain B: L.47 Ligands: DTT.5 No protein-ligand interaction detected (PLIP) DTT.5: 6 residues within 4Å: Chain A: R.68, S.69, H.70 Chain B: L.47, M.75 Ligands: DTT.4 No protein-ligand interaction detected (PLIP) DTT.7: 4 residues within 4Å: Chain A: L.47 Chain B: S.69, H.70 Ligands: DTT.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.69 DTT.8: 3 residues within 4Å: Chain B: S.58, S.60, K.61 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.58, B:K.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guan, R. et al., X-ray crystal structure of the N-terminal region of Moloney murine leukemia virus integrase and its implications for viral DNA recognition. Proteins (2017)

Release Date

2014-02-05

Peptides

Integrase p46: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Integrase p46

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