SMTL ID : 4o5g.1

DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: D.70, H.192, H.228 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.70, A:D.70, A:H.192, A:H.228 MN.2: 5 residues within 4Å: Chain A: D.26, H.28, D.70, H.228, H.230 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.26, A:H.28, A:D.70, A:H.228 MN.4: 3 residues within 4Å: Chain B: D.70, H.192, H.228 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.70, B:H.228 MN.5: 5 residues within 4Å: Chain B: D.26, H.28, D.70, H.228, H.230 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.26, B:H.28, B:D.70, B:H.230

2 x 2PV: (5~{E})-5-[(4-aminophenyl)methylidene]-2-azanylidene-1,3-thiazolidin-4-one(Non-covalent)

2PV.3: 11 residues within 4Å: Chain A: G.69, D.70, L.71, L.72, H.73, S.74, R.75, V.101, P.103, G.104, N.105 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:D.70, A:R.75, A:N.105 Hydrogen bonds: A:G.69, A:L.71, A:G.104 2PV.6: 11 residues within 4Å: Chain B: G.69, D.70, L.71, L.72, S.74, R.75, L.86, V.101, P.103, G.104, N.105 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shibata, A. et al., DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities. Mol.Cell (2014)

Release Date

2014-01-08

Peptides

Exonuclease, putative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Exonuclease, putative

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