SMTL ID : 4obd.1 (1 other biounit)

Crystal Structure of Nelfinavir-Resistant, Inactive HIV-1 Protease (D30N/N88D) in Complex with the p1-p6 substrate variant (L449F/S451N)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-2-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain B: K.7, R.8, L.10 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.8, A:R.87

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain B: Q.2 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.2, B:Q.2 EDO.3: 4 residues within 4Å: Chain A: K.7, R.8 Chain B: R.87 Chain C: R.9 5 PLIP interactions: 2 interactions with chain C, 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: C:R.9, C:R.9, B:R.87, B:R.87, A:R.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kolli, M. et al., HIV-1 protease-substrate coevolution in nelfinavir resistance. J.Virol. (2014)

Release Date

2014-11-26

Peptides

HIV-1 Protease: AB
p1-p6 peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

HIV-1 Protease

p1-p6 peptide

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