SMTL ID : 4oi2.1

C. Elegans Clp1 and ADP and Mg2+ (turnover state)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: E.19, R.21, F.42, R.59, V.60, A.61, D.127, V.128, G.129, K.130, T.131, T.132, S.285, G.287, V.288, R.291 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:E.19, A:D.127, A:V.128, A:G.129, A:K.130, A:T.131, A:T.132, A:T.132, A:S.285, A:R.291 Water bridges: A:T.131, A:T.131 Salt bridges: A:R.291

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.131 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.131, H2O.1, H2O.1, H2O.1, H2O.1

1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.3: 5 residues within 4Å: Chain A: W.65, L.91, Y.140, R.143, Q.144 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dikfidan, A. et al., RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1. Mol.Cell (2014)

Release Date

2014-05-14

Peptides

Protein clpf-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein clpf-1

Related Entries With Identical Sequence