SMTL ID : 4oia.1 (1 other biounit)

Crystal Structure of ICAM-5 D1-D4 ectodomain fragment, Space Group P4322

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

monomer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.23, W.51 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: S.19, N.43, Q.55, V.57 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain A: Y.232, N.272, T.274, N.279 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 1 residues within 4Å: Chain A: N.106 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 2 residues within 4Å: Chain A: N.164, P.187 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 2 residues within 4Å: Chain A: D.90, N.183 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.183 NAG.7: 2 residues within 4Å: Chain A: Q.268, N.285 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.268, A:N.285, A:N.285 NAG.8: 1 residues within 4Å: Chain A: N.366 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.366

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.9: 1 residues within 4Å: Chain A: L.82 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Recacha, R. et al., Crystal structures of an ICAM-5 ectodomain fragment show electrostatic-based homophilic adhesions. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-07-16

Peptides

Intercellular adhesion molecule 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Intercellular adhesion molecule 5

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