SMTL ID : 4oia.2 (1 other biounit)

Crystal Structure of ICAM-5 D1-D4 ectodomain fragment, Space Group P4322

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

monomer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.23, S.25, Q.46, W.51 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 1 residues within 4Å: Chain A: N.106 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain A: G.162, N.164, P.187 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain A: Y.232, N.272, N.279, E.281 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.4: 6 residues within 4Å: Chain A: D.90, V.92, N.183, S.184, S.185, A.186 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.186

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 2 residues within 4Å: Chain A: N.43, Q.55 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.55 NAG.7: 2 residues within 4Å: Chain A: Q.268, N.285 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.285 NAG.8: 1 residues within 4Å: Chain A: N.366 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.366

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Recacha, R. et al., Crystal structures of an ICAM-5 ectodomain fragment show electrostatic-based homophilic adhesions. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-07-16

Peptides

Intercellular adhesion molecule 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Intercellular adhesion molecule 5

Related Entries With Identical Sequence