SMTL ID : 4okz.2 (3 other biounits)

Selinadiene Synthase in complex with dihydrofarnesyl pyrophosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: D.82, D.83, E.87, K.231 Ligands: MG.2, 3E9.4 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.87, H2O.12, H2O.12, H2O.13 MG.2: 4 residues within 4Å: Chain A: D.82, E.87 Ligands: MG.1, 3E9.4 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.82, A:E.87, H2O.11, H2O.12, H2O.13 MG.3: 5 residues within 4Å: Chain A: R.178, N.224, S.228, E.232 Ligands: 3E9.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.228, A:E.232, H2O.12

1 x 3E9: (3S,6E)-3,7,11-trimethyldodeca-6,10-dien-1-yl trihydrogen diphosphate(Non-covalent)

3E9.4: 21 residues within 4Å: Chain A: F.55, L.78, F.79, D.82, E.87, Y.152, R.178, D.181, G.182, A.183, V.187, I.220, N.224, S.228, K.231, E.232, R.310, Y.311 Ligands: MG.1, MG.2, MG.3 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:F.55, A:L.78, A:L.78, A:F.79, A:D.82, A:Y.152, A:V.187, A:I.220 Hydrogen bonds: A:N.224, A:S.228, A:E.232, A:Y.311, A:Y.311 Water bridges: A:R.178, A:R.178, A:K.231, A:K.231, A:R.310, A:R.310 Salt bridges: A:R.178, A:K.231, A:R.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baer, P. et al., Induced-fit mechanism in class i terpene cyclases. Angew.Chem.Int.Ed.Engl. (2014)

Release Date

2014-06-11

Peptides

Terpene synthase metal-binding domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Terpene synthase metal-binding domain-containing protein

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