SMTL ID : 4ol0.1

Crystal structure of transportin-SR2, a karyopherin involved in human disease, in complex with Ran

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.24, T.42, D.65 Ligands: GTP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.24, A:T.42

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 26 residues within 4Å: Chain A: G.19, G.20, T.21, G.22, K.23, T.24, T.25, F.35, E.36, K.37, K.38, Y.39, V.40, A.41, T.42, A.67, G.68, Q.69, N.122, K.123, D.125, I.126, S.150, A.151, K.152 Ligands: MG.1 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.20, A:T.21, A:T.21, A:G.22, A:K.23, A:T.24, A:T.24, A:T.25, A:K.37, A:T.42, A:T.42, A:G.68, A:Q.69, A:N.122, A:K.123, A:K.123, A:A.151, A:K.152 Salt bridges: A:K.23, A:K.23, A:D.125 pi-Stacking: A:F.35, A:F.35 pi-Cation interactions: A:K.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsirkone, V.G. et al., Structure of transportin SR2, a karyopherin involved in human disease, in complex with Ran. Acta Crystallogr.,Sect.F (2014)

Release Date

2014-04-09

Peptides

GTP-binding nuclear protein Ran: A
Transportin-3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GTP-binding nuclear protein Ran

Transportin-3

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