SMTL ID : 4oni.1 (1 other biounit)

Structure of Human Orphan Receptor LRH1 bound to two bacterial phospholipids

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x EPH: L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE(Non-covalent)

EPH.1: 19 residues within 4Å: Chain A: F.54, M.57, A.61, L.98, I.99, H.102, I.115, L.117, I.127, I.128, A.132, G.133, L.136, M.140, A.143, A.225, Y.228, L.229, K.232 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.54, A:M.57, A:A.61, A:L.98, A:I.115, A:L.117, A:I.127, A:L.136, A:A.143, A:A.225, A:Y.228, A:L.229 Hydrogen bonds: A:G.133, A:Y.228, A:Y.228 Salt bridges: A:K.232

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: L.38, Q.39, L.56, Q.121 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.121 GOL.3: 7 residues within 4Å: Chain A: L.166, V.167, S.170, D.172, Q.186, L.215, R.219 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:L.166, A:D.172, A:Q.186, A:R.219 Water bridges: A:S.170, A:S.170, A:L.171, A:L.171 GOL.4: 4 residues within 4Å: Chain A: Y.37, Q.63, F.66, E.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.70 Water bridges: A:S.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gorman, M.A. et al., Human nuclear receptor LRH1 bound to phosopholipids and SHP peptide. To be Published

Release Date

2015-02-11

Peptides

Nuclear receptor subfamily 5 group A member 2: A
Nuclear receptor subfamily 0 group B member 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Nuclear receptor subfamily 5 group A member 2

Nuclear receptor subfamily 0 group B member 2

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