SMTL ID : 4onn.1

Crystal structure of human Mms2/Ubc13 - BAY 11-7082

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: M.96, N.97, G.98, I.99, N.100, N.101 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.98, A:N.101 Water bridges: A:N.100, A:S.102 GOL.2: 7 residues within 4Å: Chain A: N.97, S.110, I.111, P.112, L.133, E.138, N.139 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.138, A:N.139 Water bridges: A:S.136 GOL.4: 6 residues within 4Å: Chain B: P.75, K.76, V.77, R.93, I.94, L.99 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.75, B:V.77, B:I.94, B:I.94

1 x BY1: 3-[(4-methylphenyl)sulfonyl]prop-2-enenitrile(Covalent)

BY1.3: 7 residues within 4Å: Chain B: P.86, N.87, V.88, D.89, C.95, L.129, N.131 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.86, B:N.131, B:N.131 Water bridges: B:D.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hodge, C.D. et al., Covalent Inhibition of Ubc13 Affects Ubiquitin Signaling and Reveals Active Site Elements Important for Targeting. Acs Chem.Biol. (2015)

Release Date

2015-05-06

Peptides

Ubiquitin-conjugating enzyme E2 variant 2: A
Ubiquitin-conjugating enzyme E2 N: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin-conjugating enzyme E2 variant 2

Ubiquitin-conjugating enzyme E2 N

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