SMTL ID : 4ooj.1 (1 other biounit)

Crystal structure of the N-terminal domain of the Legionella pneumophila protein SidC at 2.4A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: C.48, D.170 No protein-ligand interaction detected (PLIP) MG.8: 2 residues within 4Å: Chain B: C.48, D.170 No protein-ligand interaction detected (PLIP)

10 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 7 residues within 4Å: Chain A: P.16, R.18, C.19, Q.74, E.77, Y.78, Q.81 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.74 PEG.3: 7 residues within 4Å: Chain A: R.163, N.169, K.171, T.173, R.184, N.185, I.186 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.169, A:K.171, A:R.184, A:S.187 Water bridges: A:R.163 PEG.4: 8 residues within 4Å: Chain A: L.518, D.519, K.522, S.556, K.557, E.558, A.606, I.607 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.518, A:S.556, A:E.558, A:E.558, A:I.607 PEG.5: 8 residues within 4Å: Chain A: G.39, D.40, E.41, I.42, L.44, K.436, H.437, T.440 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.40, A:E.41, A:I.42 PEG.6: 5 residues within 4Å: Chain A: N.90, S.91, K.93, K.94 Ligands: PEG.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.93, A:K.94, A:K.94 PEG.7: 5 residues within 4Å: Chain A: K.87, N.90, S.91, K.94 Ligands: PEG.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.94 PEG.9: 6 residues within 4Å: Chain B: R.163, N.169, K.171, T.173, R.184, N.185 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.169, B:R.184, B:N.185 Water bridges: B:R.163, B:S.187 PEG.10: 4 residues within 4Å: Chain B: S.147, G.148, E.151, R.478 No protein-ligand interaction detected (PLIP) PEG.11: 4 residues within 4Å: Chain B: N.132, R.135, Q.136, T.139 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.139 PEG.12: 4 residues within 4Å: Chain B: E.53, K.68, G.466, R.467 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.56, B:R.467

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gazdag, E.M. et al., The structure of the N-terminal domain of the Legionella protein SidC. J.Struct.Biol. (2014)

Release Date

2014-02-26

Peptides

SidC, interaptin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SidC, interaptin

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