SMTL ID : 4opc.1

Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Non-covalent)

FDA.1: 36 residues within 4Å: Chain A: I.12, G.13, G.15, F.16, A.17, V.35, D.36, S.37, K.38, K.46, P.47, C.48, G.49, D.50, A.51, T.121, T.122, A.123, A.157, T.158, G.159, S.161, S.163, A.186, W.218, F.220, A.268, V.270, G.288, D.289, V.294, G.299, G.300, G.301, K.302 Ligands: PGT.2 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:A.186, A:A.268 Hydrogen bonds: A:G.15, A:A.17, A:S.37, A:K.46, A:G.49, A:A.51, A:A.51, A:A.123, A:A.123, A:S.161, A:S.163, A:D.289, A:G.301, A:K.302, A:K.302, A:K.302 Water bridges: A:F.16, A:F.16, A:G.18, A:S.37, A:Y.160, A:S.290, A:S.290, A:G.303, A:A.305

1 x PGT: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE(Non-covalent)

PGT.2: 29 residues within 4Å: Chain A: A.51, S.53, A.55, H.56, I.77, L.79, D.184, I.207, G.214, G.215, Y.216, W.218, F.220, G.232, N.295, P.296, V.297, H.298, G.299, G.300, I.307, Y.341, K.344, L.355, Q.356, L.377, L.378, S.381 Ligands: FDA.1 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:I.77, A:L.79, A:I.207, A:Y.216, A:W.218, A:F.220, A:V.297, A:H.298, A:L.355, A:L.377 Hydrogen bonds: A:S.53, A:N.295, A:K.344, A:K.344, A:S.381 Water bridges: A:K.59, A:G.300, A:Y.341 Salt bridges: A:H.56, A:H.298, A:H.298, A:H.298, A:K.344

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kung, Y. et al., Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase. Structure (2014)

Release Date

2014-07-09

Peptides

Conserved Archaeal protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Conserved Archaeal protein

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