SMTL ID : 4opd.2 (1 other biounit)

Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Non-covalent)

FDA.1: 37 residues within 4Å: Chain A: I.12, G.13, G.15, F.16, A.17, V.35, D.36, S.37, K.38, K.46, P.47, C.48, G.49, D.50, A.51, T.121, T.122, A.123, A.157, T.158, G.159, S.161, S.163, A.186, Y.187, W.218, F.220, A.268, V.270, G.288, D.289, V.294, G.299, G.300, G.301, K.302 Ligands: GRG.2 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:A.186, A:A.268 Hydrogen bonds: A:G.15, A:A.17, A:S.37, A:K.46, A:G.49, A:A.51, A:A.51, A:A.123, A:A.123, A:S.161, A:S.163, A:D.289, A:G.301, A:K.302, A:K.302, A:K.302 Water bridges: A:F.16, A:F.16, A:G.18, A:S.37, A:Y.160, A:S.290, A:S.290, A:G.303

3 x GRG: GERANYLGERANYL DIPHOSPHATE(Non-covalent)

GRG.2: 19 residues within 4Å: Chain A: A.51, V.52, S.53, I.74, N.91, G.92, E.93, G.94, L.203, I.205, Y.216, W.218, F.220, H.298, G.299, G.300, L.378 Ligands: FDA.1, GRG.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.74, A:L.203, A:I.205, A:W.218 Hydrogen bonds: A:S.53 Water bridges: A:S.53, A:E.93, A:E.93, A:E.93 GRG.3: 16 residues within 4Å: Chain A: S.53, H.56, I.77, I.205, I.207, G.215, Y.216, N.295, V.297, H.298, Y.341, K.344, L.355, S.381 Ligands: GRG.2, GRG.4 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:I.77, A:I.205, A:I.207, A:Y.216, A:V.297, A:L.355 Hydrogen bonds: A:N.295, A:Y.341 Water bridges: A:S.53, A:H.56, A:G.300, A:K.344, A:K.344, A:K.344, A:K.344 Salt bridges: A:H.56, A:H.298, A:K.344 GRG.4: 15 residues within 4Å: Chain A: N.295, V.297, H.298, K.344, L.348, F.351, I.363, I.371, I.372, L.377, A.380, S.381, L.386, L.410 Ligands: GRG.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.297, A:L.348, A:F.351, A:F.351, A:I.371, A:I.372, A:I.372, A:L.377, A:A.380, A:L.410 Hydrogen bonds: A:N.295, A:H.298, A:K.344

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kung, Y. et al., Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase. Structure (2014)

Release Date

2014-07-09

Peptides

Conserved Archaeal protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Conserved Archaeal protein

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