SMTL ID : 4ow0.1 (1 other biounit)

X-Ray Structural and Biological Evaluation of a Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-Like Proteases

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.190, C.193, C.225, C.227, A.231 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.190, A:C.193, A:C.225, A:C.227

1 x S88: N-[(3-fluorophenyl)methyl]-1-[(1R)-1-naphthalen-1-ylethyl]piperidine-4-carboxamide(Non-covalent)

S88.2: 12 residues within 4Å: Chain A: L.163, G.164, D.165, M.209, P.248, P.249, Y.265, Y.269, Q.270, Y.274, T.302 Ligands: DMS.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:D.165, A:P.248, A:P.249, A:Y.269, A:Y.269, A:Y.269, A:T.302 Hydrogen bonds: A:Y.269, A:Y.274 Salt bridges: A:D.165 pi-Stacking: A:Y.269, A:Y.269 pi-Cation interactions: A:Y.265

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 6 residues within 4Å: Chain A: K.158, L.163, G.164, E.168, Y.269 Ligands: S88.2 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.168 DMS.5: 11 residues within 4Å: Chain A: E.125, V.126, N.178, L.179, S.181, A.182, V.206, E.239, S.240, S.241, F.242 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: L.186, V.188, T.198, L.200, Y.208, Q.233 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baez-Santos, Y.M. et al., X-ray Structural and Biological Evaluation of a Series of Potent and Highly Selective Inhibitors of Human Coronavirus Papain-like Proteases. J.Med.Chem. (2014)

Release Date

2014-04-23

Peptides

papain-like protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

papain-like protease

Related Entries With Identical Sequence