SMTL ID : 4ozf.1

JR5.1 protein complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: Y.19, V.118, N.120, E.168, W.170 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.118 Hydrogen bonds: A:Y.19, A:Y.19, A:N.120 NAG.2: 1 residues within 4Å: Chain A: N.80 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petersen, J. et al., T-cell receptor recognition of HLA-DQ2-gliadin complexes associated with celiac disease. Nat.Struct.Mol.Biol. (2014)

Release Date

2014-04-16

Peptides

HLA class II histocompatibility antigen, DQ alpha 1 chain: A
HLA class II histocompatibility antigen, DQ beta 1 chain: B
T-CELL RECEPTOR, JR5.1 ALPHA CHAIN: C
T-CELL RECEPTOR, JR5.1 BETA CHAIN: D
deamidated Gliadin-alpha2 peptide: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
H

E
J

HLA class II histocompatibility antigen, DQ alpha 1 chain

HLA class II histocompatibility antigen, DQ beta 1 chain

T-CELL RECEPTOR, JR5.1 ALPHA CHAIN

T-CELL RECEPTOR, JR5.1 BETA CHAIN

deamidated Gliadin-alpha2 peptide

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