SMTL ID : 4p0i.1 (1 other biounit)

Structure of the PBP NocT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: T.98, K.173, D.198 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.198 Water bridges: A:K.173 EDO.3: 4 residues within 4Å: Chain A: E.12, S.14, Y.15 Ligands: PEG.2 No protein-ligand interaction detected (PLIP) EDO.4: 1 residues within 4Å: Ligands: PEG.2 No protein-ligand interaction detected (PLIP) EDO.5: 3 residues within 4Å: Chain A: K.5, I.7, L.226 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.223, A:L.226

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: E.12, W.53 Ligands: EDO.3, EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lang, J. et al., Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host. Plos Pathog. (2014)

Release Date

2014-10-22

Peptides

Nopaline-binding periplasmic protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nopaline-binding periplasmic protein

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