SMTL ID : 4pc6.2 (1 other biounit)

Elongation factor Tu:Ts complex with bound GDPNP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-oligomer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 15 residues within 4Å: Chain A: H.20, V.21, D.22, G.24, K.25, T.26, T.27, N.136, K.137, D.139, M.140, S.174, A.175, L.176 Chain B: E.274 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:V.21, A:H.23, A:G.24, A:K.25, A:T.26, A:T.26, A:T.27, A:T.27, A:N.136, A:K.137, A:K.137, A:A.175, A:L.176 Salt bridges: A:D.139

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: G.317, G.318, R.319, H.320, E.379, R.382, V.384 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.320, A:E.379, A:R.382 Water bridges: A:T.321 GOL.3: 5 residues within 4Å: Chain B: E.178, I.180, G.254, F.255 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.255 Water bridges: B:I.180, B:T.253 GOL.4: 4 residues within 4Å: Chain B: F.255, I.256, R.257 Ligands: GOL.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.255, B:R.257, B:R.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thirup, S.S. et al., Structural outline of the detailed mechanism for elongation factor Ts-mediated guanine nucleotide exchange on elongation factor Tu. J.Struct.Biol. (2015)

Release Date

2015-05-06

Peptides

Elongation factor Tu: A
Elongation factor Ts: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Elongation factor Tu

Elongation factor Ts

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