SMTL ID : 5jbq.1

EF-TU (ESCHERICHIA COLI) IN COMPLEX WITH THIOMURACIN ANALOG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

hetero-oligomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: H.20, V.21, D.22, H.23, G.24, K.25, T.26, T.27, F.47, N.136, K.137, D.139, M.140, S.174, A.175, L.176 Ligands: MG.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:D.22, A:H.23, A:G.24, A:K.25, A:T.26, A:T.27, A:T.27, A:N.136, A:K.137, A:K.137, A:A.175, A:L.176 Water bridges: A:T.27 Salt bridges: A:K.25, A:D.139

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: E.153 No protein-ligand interaction detected (PLIP) MG.3: 3 residues within 4Å: Chain A: T.26, C.82 Ligands: GDP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.26

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: R.319, H.320, T.321, R.382 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.320, A:T.321 Salt bridges: A:R.319, A:R.382

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

LaMarche, M.J. et al., Antibacterial and Solubility Optimization of Thiomuracin A. J.Med.Chem. (2016)

Release Date

2016-07-13

Peptides

Elongation factor Tu 1: A
THIOMURACIN ANALOG: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Elongation factor Tu 1

THIOMURACIN ANALOG

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