SMTL ID : 4pca.2 (2 other biounits)

X-ray crystal structure of an O-methyltransferase from Anaplasma phagocytophilum bound to SAH and Manganese

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: A.46, D.144, K.147, D.170, N.171 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.144, A:D.170, H2O.1, H2O.2, H2O.4 MN.4: 5 residues within 4Å: Chain B: A.46, D.144, K.147, D.170, N.171 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.144, B:D.170, H2O.11, H2O.11, H2O.13

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 19 residues within 4Å: Chain A: A.46, Q.47, L.48, E.70, G.72, T.73, C.74, F.77, S.78, E.96, K.97, N.101, G.123, E.124, A.125, D.144, A.145, N.146, Y.153 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:L.48, A:T.73, A:C.74, A:F.77, A:S.78, A:S.78, A:K.97, A:N.101, A:E.124, A:A.125, A:D.144, A:N.146, A:N.146, A:Y.153 Water bridges: A:G.76, A:K.97, A:E.124, A:E.124, A:S.149 pi-Cation interactions: A:K.97 SAH.5: 19 residues within 4Å: Chain B: L.43, Q.47, L.48, E.70, G.72, T.73, C.74, F.77, S.78, E.96, K.97, N.101, G.123, E.124, A.125, D.144, A.145, N.146, Y.153 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:L.48, B:C.74, B:F.77, B:S.78, B:S.78, B:K.97, B:N.101, B:E.124, B:A.125, B:D.144, B:D.144, B:N.146, B:Y.153 Water bridges: B:G.76, B:E.124, B:L.126, B:N.146

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: Q.57, R.61, H.84, A.85 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.61, A:R.61 Water bridges: A:R.61, A:R.61, A:R.61 EDO.6: 5 residues within 4Å: Chain A: L.209 Chain B: Q.57, R.61, H.84, A.85 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.61, B:R.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oliva Chavez, A.S. et al., An O-Methyltransferase Is Required for Infection of Tick Cells by Anaplasma phagocytophilum. Plos Pathog. (2015)

Release Date

2014-06-18

Peptides

O-methyltransferase family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

O-methyltransferase family protein

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