SMTL ID : 4pcl.1 (1 other biounit)

X-ray crystal structure of an O-methyltransferase from Anaplasma phagocytophilum bound to SAM and a Manganese ion.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 19 residues within 4Å: Chain A: A.46, Q.47, L.48, G.72, T.73, C.74, F.77, S.78, E.96, K.97, D.98, N.101, G.123, E.124, A.125, D.144, A.145, N.146, Y.153 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:L.48, A:T.73, A:C.74, A:F.77, A:S.78, A:S.78, A:S.78, A:K.97, A:D.98, A:D.98, A:N.101, A:E.124, A:A.125, A:N.146, A:Y.153 Water bridges: A:A.79, A:L.126 Salt bridges: A:D.144 pi-Cation interactions: A:K.97 SAM.4: 19 residues within 4Å: Chain B: A.46, Q.47, L.48, G.72, T.73, C.74, F.77, S.78, E.96, K.97, D.98, N.101, G.123, E.124, A.125, D.144, A.145, N.146, Y.153 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:L.48, B:T.73, B:C.74, B:F.77, B:S.78, B:S.78, B:S.78, B:K.97, B:D.98, B:N.101, B:E.124, B:A.125, B:N.146, B:Y.153 Water bridges: B:A.79, B:E.124, B:L.126 Salt bridges: B:D.144 pi-Cation interactions: B:K.97

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: D.200, A.203, N.204 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.200 Water bridges: A:N.204 EDO.5: 3 residues within 4Å: Chain B: D.200, A.203, N.204 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.200 Water bridges: B:N.204

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 4 residues within 4Å: Chain A: D.144, K.147, D.170, N.171 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.144, A:D.170, H2O.1 MN.6: 4 residues within 4Å: Chain B: D.144, K.147, D.170, N.171 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.144, B:D.170, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oliva Chavez, A.S. et al., An O-Methyltransferase Is Required for Infection of Tick Cells by Anaplasma phagocytophilum. Plos Pathog. (2015)

Release Date

2014-06-18

Peptides

O-methyltransferase family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

O-methyltransferase family protein

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