SMTL ID : 4pff.1 (1 other biounit)

Crystal structure of Plasmodium vivax SHMT with PLP Schiff base

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 16 residues within 4Å: Chain A: S.100, G.101, S.102, N.105, H.129, Y.182, T.183, D.208, S.210, H.211, T.234, H.236, K.237, R.243 Chain B: Y.54, G.272 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:K.237 Hydrogen bonds: A:G.101, A:S.102, A:S.102, A:N.105, A:S.210, A:H.211, B:Y.54, B:G.272 Water bridges: A:K.237 Salt bridges: A:H.236, A:K.237, A:R.243 pi-Stacking: A:H.129 PLP.2: 17 residues within 4Å: Chain A: Y.54, G.271, G.272 Chain B: S.100, G.101, S.102, N.105, H.129, Y.182, T.183, D.208, S.210, H.211, T.234, H.236, K.237, R.243 14 PLIP interactions: 3 interactions with chain A, 11 interactions with chain B Hydrogen bonds: A:Y.54, A:G.271, A:G.272, B:G.101, B:S.102, B:N.105, B:S.210, B:H.211, B:K.237 Hydrophobic interactions: B:K.237 Salt bridges: B:H.236, B:K.237, B:R.243 pi-Stacking: B:H.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chitnumsub, P. et al., Structures of Plasmodium vivax serine hydroxymethyltransferase: implications for ligand-binding specificity and functional control. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-12-17

Peptides

Serine hydroxymethyltransferase, putative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine hydroxymethyltransferase, putative

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