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SMTL ID : 4pff.2
(1 other biounit)
Crystal structure of Plasmodium vivax SHMT with PLP Schiff base
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.30 Å
Oligo State
homo-dimer
Ligands
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Covalent)
PLP.1:
17 residues within 4Å:
Chain A:
S.100
,
G.101
,
S.102
,
N.105
,
H.129
,
Y.182
,
T.183
,
D.208
,
S.210
,
H.211
,
T.234
,
H.236
,
K.237
,
R.243
Chain B:
Y.54
,
G.271
,
G.272
17
PLIP interactions
:
14 interactions with chain A
,
3 interactions with chain B
Hydrophobic interactions:
A:K.237
Hydrogen bonds:
A:G.101
,
A:S.102
,
A:S.102
,
A:N.105
,
A:S.210
,
A:H.211
,
B:Y.54
,
B:G.271
,
B:G.272
Water bridges:
A:T.232
,
A:K.237
,
A:K.237
Salt bridges:
A:H.236
,
A:K.237
,
A:R.243
pi-Stacking:
A:H.129
PLP.2:
17 residues within 4Å:
Chain A:
Y.54
,
G.271
,
G.272
Chain B:
S.100
,
G.101
,
S.102
,
N.105
,
H.129
,
Y.182
,
T.183
,
D.208
,
S.210
,
H.211
,
T.234
,
H.236
,
K.237
,
R.243
17
PLIP interactions
:
4 interactions with chain A
,
13 interactions with chain B
Hydrogen bonds:
A:Y.54
,
A:Y.54
,
A:G.271
,
A:G.272
,
B:G.101
,
B:S.102
,
B:S.102
,
B:N.105
,
B:S.210
,
B:H.211
,
B:K.237
Hydrophobic interactions:
B:K.237
Water bridges:
B:T.232
Salt bridges:
B:H.236
,
B:K.237
,
B:R.243
pi-Stacking:
B:H.129
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Chitnumsub, P. et al., Structures of Plasmodium vivax serine hydroxymethyltransferase: implications for ligand-binding specificity and functional control. Acta Crystallogr.,Sect.D (2014)
Release Date
2014-12-17
Peptides
Serine hydroxymethyltransferase, putative:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
C
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Serine hydroxymethyltransferase, putative
Toggle Identical (AB)
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