SMTL ID : 4pie.1

Crystal structure of human adenovirus 2 protease a substrate based nitrile inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 3FO: N-{(2S)-2-(3-chlorophenyl)-2-[(methylsulfonyl)amino]acetyl}-L-phenylalanyl-N-[(2Z)-2-iminoethyl]glycinamide(Covalent)

3FO.1: 20 residues within 4Å: Chain A: G.2, S.3, S.4, E.5, Q.6, Y.25, D.26, N.44, A.46, G.47, R.48, G.51, G.52, V.53, H.54, W.55, Q.115, S.119, A.120, C.122 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:E.5, A:D.26, A:N.44, A:R.48 Hydrogen bonds: A:S.3, A:S.3, A:E.5, A:E.5, A:N.44, A:R.48, A:G.51, A:V.53, A:H.54, A:S.119, A:C.122 Water bridges: A:G.123 pi-Stacking: A:W.55 Halogen bonds: A:A.46

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: S.76, D.77, K.109 Chain B: L.5, R.7 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.77, A:D.77 Salt bridges: A:K.109, B:R.7 SO4.3: 2 residues within 4Å: Chain A: P.165, T.166 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 2 residues within 4Å: Chain A: C.199 Ligands: ACT.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.199

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 1 residues within 4Å: Ligands: ZN.4 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mac Sweeney, A. et al., Discovery and structure-based optimization of adenain inhibitors. Acs Med.Chem.Lett. (2014)

Release Date

2014-09-10

Peptides

Protease: A
Pre-protein VI: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

Pre-protein VI

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