SMTL ID : 4pis.1

Crystal structure of human adenovirus 8 protease in complex with a nitrile inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 3FU: N~2~-[(2R)-2-(3,5-dichlorophenyl)-2-(dimethylamino)acetyl]-N-({2-[(Z)-iminomethyl]pyrimidin-4-yl}methyl)-L-isoleucinamide(Covalent)

3FU.1: 20 residues within 4Å: Chain A: S.1, S.3, S.4, E.5, T.24, H.25, D.26, N.44, A.46, G.47, R.48, G.51, G.52, V.53, H.54, W.55, Q.115, S.119, A.120, C.122 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:D.26 Hydrogen bonds: A:S.1, A:E.5, A:N.44, A:G.51, A:S.119, A:C.122 Water bridges: A:S.3 pi-Stacking: A:W.55 Halogen bonds: A:T.24, A:A.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mac Sweeney, A. et al., Discovery and structure-based optimization of adenain inhibitors. Acs Med.Chem.Lett. (2014)

Release Date

2014-09-10

Peptides

Protease: A
PVI: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

PVI

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