SMTL ID : 4wx6.2 (1 other biounit)

Crystal structure of human adenovirus 8 protease with an irreversible vinyl sulfone inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-oligomer

Ligands

1 x 3VK: N-[(2S)-2-(3,5-dichlorophenyl)-2-(ethylamino)acetyl]-3-methyl-L-valyl-N-[3-(methylsulfonyl)propyl]glycinamide(Covalent)

3VK.1: 24 residues within 4Å: Chain A: S.1, G.2, S.3, S.4, E.5, Q.6, T.24, H.25, D.26, N.44, A.46, R.48, G.51, G.52, V.53, H.54, W.55, F.73, Y.84, Q.115, S.119, A.120, C.122, M.201 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:E.5, A:D.26 Hydrogen bonds: A:S.3, A:S.3, A:E.5, A:E.5, A:N.44, A:G.51, A:V.53 pi-Stacking: A:W.55 Halogen bonds: A:T.24, A:T.24, A:A.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grosche, P. et al., Structure-based design and optimization of potent inhibitors of the adenoviral protease. Bioorg.Med.Chem.Lett. (2015)

Release Date

2015-01-14

Peptides

Protease: A
PVI: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Protease

PVI

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