SMTL ID : 4pnc.1

E. COLI METHIONINE AMINOPEPTIDASE IN COMPLEX WITH INHIBITOR 7-METHOXY-2-METHYLEN-3,4-DIHYDRONAPHTHALEN-1(2H)-ONE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

1 x 7NP: (2S)-7-methoxy-2-methyl-3,4-dihydronaphthalen-1(2H)-one(Non-covalent)

7NP.1: 7 residues within 4Å: Chain A: C.59, Y.65, C.70, H.79, F.177, H.178, W.221 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.65, A:Y.65, A:F.177 pi-Stacking: A:H.79

3 x CO: COBALT (II) ION(Non-covalent)

CO.2: 5 residues within 4Å: Chain A: D.97, T.99, D.108, E.235 Ligands: CO.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.97, A:D.108, A:E.235, H2O.9, H2O.11 CO.3: 6 residues within 4Å: Chain A: D.108, H.171, T.202, E.204, E.235 Ligands: CO.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.108, A:H.171, A:E.204, A:E.235, H2O.11 CO.4: 2 residues within 4Å: Chain A: E.52, H.54 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.54, H2O.1, H2O.4, H2O.5, H2O.6

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: S.72, I.73, N.74, V.76, S.231 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Altmeyer, M. et al., Beta-aminoketones as prodrugs for selective irreversible inhibitors of type-1 methionine aminopeptidases. Bioorg.Med.Chem.Lett. (2014)

Release Date

2014-07-23

Peptides

Methionine aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase

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