SMTL ID : 4ppd.1 (2 other biounits)

PduA K26A, crystal form 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: K.61 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.61 SO4.3: 6 residues within 4Å: Chain B: R.54, H.87, T.88, D.89, V.90, E.91 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.89, B:V.90, B:E.91 Salt bridges: B:R.54 SO4.4: 1 residues within 4Å: Chain C: K.61 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:K.61 SO4.6: 6 residues within 4Å: Chain D: R.54, H.87, T.88, D.89, V.90, E.91 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.89, D:V.90, D:E.91 Salt bridges: D:R.54 SO4.7: 1 residues within 4Å: Chain E: K.61 1 PLIP interactions: 1 interactions with chain E Salt bridges: E:K.61 SO4.9: 6 residues within 4Å: Chain F: R.54, H.87, T.88, D.89, V.90, E.91 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:D.89, F:V.90, F:E.91 Salt bridges: F:R.54

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: S.46 Chain C: S.46 Chain D: S.46 Chain E: G.45, S.46 Chain F: S.46 Ligands: GOL.5, GOL.8 6 PLIP interactions: 1 interactions with chain F, 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain D, 1 interactions with chain E Hydrogen bonds: F:S.46, A:S.46, C:S.46, B:S.46, D:S.46, E:S.46 GOL.5: 8 residues within 4Å: Chain A: G.45, S.46 Chain B: S.46 Chain C: S.46 Chain E: S.46 Chain F: S.46 Ligands: GOL.2, GOL.8 6 PLIP interactions: 1 interactions with chain F, 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain D, 1 interactions with chain E Hydrogen bonds: F:S.46, A:S.46, C:S.46, B:S.46, D:S.46, E:S.46 GOL.8: 8 residues within 4Å: Chain A: S.46 Chain B: S.46 Chain C: G.45, S.46 Chain D: S.46 Chain E: S.46 Ligands: GOL.2, GOL.5 6 PLIP interactions: 1 interactions with chain F, 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain D, 1 interactions with chain E Hydrogen bonds: F:S.46, A:S.46, C:S.46, B:S.46, D:S.46, E:S.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sinha, S. et al., Alanine scanning mutagenesis identifies an asparagine-arginine-lysine triad essential to assembly of the shell of the pdu microcompartment. J.Mol.Biol. (2014)

Release Date

2014-05-14

Peptides

Propanediol utilization protein PduA: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Propanediol utilization protein PduA

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