SMTL ID : 4ppd.3 (2 other biounits)

PduA K26A, crystal form 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-hexamer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: G.45, S.46 Chain B: S.46 Chain C: G.45, S.46 Chain D: S.46 Chain E: S.46 Chain F: S.46 Ligands: GOL.4 8 PLIP interactions: 1 interactions with chain F, 1 interactions with chain E, 3 interactions with chain D, 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: F:S.46, E:S.46, D:S.46, A:S.46, A:S.46, B:S.46 Water bridges: D:S.46, D:S.46 GOL.4: 9 residues within 4Å: Chain A: S.46 Chain B: S.46 Chain C: S.46 Chain D: G.45, S.46 Chain E: S.46 Chain F: G.45, S.46 Ligands: GOL.1 8 PLIP interactions: 1 interactions with chain E, 2 interactions with chain D, 3 interactions with chain A, 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: E:S.46, D:S.46, D:S.46, A:S.46, B:S.46, C:S.46 Water bridges: A:S.46, A:S.46

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain C: K.61 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:K.61 SO4.3: 2 residues within 4Å: Chain C: D.65, A.69 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.65 Water bridges: C:A.66 SO4.5: 1 residues within 4Å: Chain F: K.61 1 PLIP interactions: 1 interactions with chain F Salt bridges: F:K.61 SO4.6: 2 residues within 4Å: Chain F: D.65, A.69 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:D.65 Water bridges: F:A.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sinha, S. et al., Alanine scanning mutagenesis identifies an asparagine-arginine-lysine triad essential to assembly of the shell of the pdu microcompartment. J.Mol.Biol. (2014)

Release Date

2014-05-14

Peptides

Propanediol utilization protein PduA: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
E

E
F

F
G

Propanediol utilization protein PduA

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