SMTL ID : 4pwh.1

Crystal structure of V30M mutant human transthyretin complexed with caffeic acid 1,1-dimethylallyl ester

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x PWH: 3-METHYLBUT-2-EN-1-YL (2E)-3-(3,4-DIHYDROXYPHENYL)PROP-2-ENOATE(Non-covalent)

PWH.1: 14 residues within 4Å: Chain A: K.47, L.49, A.140, L.142, S.149, T.150, T.151 Chain C: K.47, L.49, T.138, L.142, S.149, V.153 Ligands: PWH.5 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain C Hydrogen bonds: A:A.140, A:L.142, A:S.149, A:T.151 Hydrophobic interactions: C:L.49, C:T.138, C:L.142, C:V.153 PWH.4: 15 residues within 4Å: Chain B: K.47, L.49, A.140, L.142, S.149, T.150, T.151, V.153 Chain D: K.47, L.49, A.140, L.142, S.149, T.151 Ligands: PWH.8 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: B:L.49, B:L.142, B:V.153, D:A.140 Hydrogen bonds: B:A.140, B:S.149 PWH.5: 14 residues within 4Å: Chain A: K.47, L.49, T.138, L.142, S.149, V.153 Chain C: K.47, L.49, A.140, L.142, S.149, T.150, T.151 Ligands: PWH.1 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: A:L.49, A:T.138, A:L.142, A:V.153 Hydrogen bonds: C:A.140, C:L.142, C:S.149, C:T.151 PWH.8: 15 residues within 4Å: Chain B: K.47, L.49, A.140, L.142, S.149, T.151 Chain D: K.47, L.49, A.140, L.142, S.149, T.150, T.151, V.153 Ligands: PWH.4 6 PLIP interactions: 1 interactions with chain B, 5 interactions with chain D Hydrophobic interactions: B:A.140, D:L.49, D:L.142, D:V.153 Hydrogen bonds: D:A.140, D:S.149

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: C.42, H.88 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.42, A:H.88 CA.3: 2 residues within 4Å: Chain A: E.98, D.131 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.98, A:D.131, A:D.131 CA.6: 2 residues within 4Å: Chain C: C.42, H.88 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.42, C:H.88 CA.7: 2 residues within 4Å: Chain C: E.98, D.131 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.98, C:D.131, C:D.131

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Inhibitory Activities of Propolis and Its Promising Component, Caffeic Acid Phenethyl Ester, against Amyloidogenesis of Human Transthyretin. J.Med.Chem. (2014)

Release Date

2014-11-26

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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