SMTL ID : 4py0.1

Crystal structure of P2Y12 receptor in complex with 2MeSATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x 6AT: 2-(methylsulfanyl)adenosine 5'-(tetrahydrogen triphosphate)(Non-covalent)

6AT.1: 25 residues within 4Å: Chain A: R.28, R.102, C.106, S.110, V.111, Y.114, F.115, Y.118, S.165, N.168, K.182, K.183, C.184, S.185, K.188, H.196, V.199, N.200, C.203, R.371, Y.374, Q.378, F.392, K.395, E.396 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:R.28, A:C.106, A:N.168, A:T.172, A:K.182, A:C.184, A:S.185, A:K.188, A:K.188, A:N.200, A:N.200, A:Y.374, A:Q.378, A:Q.378 Salt bridges: A:R.102, A:R.102, A:R.371, A:K.395, A:K.395 pi-Stacking: A:Y.114

2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 5 residues within 4Å: Chain A: T.390, Y.393, V.394, S.397 Ligands: OLC.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.393, A:V.394 OLC.3: 9 residues within 4Å: Chain A: D.29, I.32, T.33, L.36, F.37, Y.393, S.397, W.400 Ligands: OLC.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.36, A:W.400 Hydrogen bonds: A:Y.393

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Agonist-bound structure of the human P2Y12 receptor. Nature (2014)

Release Date

2014-04-30

Peptides

P2Y purinoceptor 12, Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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P2Y purinoceptor 12, Soluble cytochrome b562

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