SMTL ID : 4py2.3 (2 other biounits)

Crystal structure of methionyl-tRNA synthetase MetRS from Brucella melitensis in complex with inhibitor 1-{3-[(3,5-DICHLOROBENZYL)AMINO]PROPYL}-3-THIOPHEN-3-YLUREA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x 43E: 1-{3-[(3,5-dichlorobenzyl)amino]propyl}-3-thiophen-3-ylurea(Non-covalent)

43E.1: 18 residues within 4Å: Chain A: A.32, I.33, Y.35, D.72, H.74, G.75, F.234, M.248, Y.249, V.250, W.251, D.253, A.254, L.255, Y.258, I.286, F.289, H.290 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.35, A:H.74, A:A.254, A:L.255, A:I.286 Hydrogen bonds: A:D.72, A:D.72, A:D.72 Halogen bonds: A:Y.258

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: T.88, P.89, R.90 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.90 EDO.3: 4 residues within 4Å: Chain A: Y.140, G.142, G.143, F.186 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.140, A:G.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ojo, K.K. et al., Brucella melitensis Methionyl-tRNA-Synthetase (MetRS), a Potential Drug Target for Brucellosis. Plos One (2016)

Release Date

2015-04-15

Peptides

Methionine--tRNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Methionine--tRNA ligase

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