SMTL ID : 5k0t.2 (2 other biounits)

Crystal structure of methionyl-tRNA synthetase MetRS from Brucella melitensis in complex with inhibitor Chem 1415

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x 415: 1-{3-[(3-chloro-5-methoxybenzyl)amino]propyl}-3-phenylurea(Non-covalent)

415.1: 18 residues within 4Å: Chain A: A.32, I.33, Y.35, D.72, H.74, G.75, F.234, M.248, Y.249, V.250, W.251, D.253, A.254, L.255, Y.258, I.286, F.289, H.290 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:H.74, A:F.234, A:Y.249, A:A.254, A:I.286 Hydrogen bonds: A:D.72, A:D.72 Halogen bonds: A:Y.258

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: G.38, H.41 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.38 EDO.3: 4 residues within 4Å: Chain A: D.411, D.414, A.415, E.418 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.411 EDO.4: 3 residues within 4Å: Chain A: K.422, D.425, D.426 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.426

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ojo, K.K. et al., Brucella melitensis Methionyl-tRNA-Synthetase (MetRS), a Potential Drug Target for Brucellosis. Plos One (2016)

Release Date

2016-05-25

Peptides

Methionine--tRNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Methionine--tRNA ligase

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