SMTL ID : 4q68.1

Crystal structure of a N-acetylmuramoyl-L-alanine amidase (BACUNI_02947) from Bacteroides uniformis ATCC 8492 at 1.07 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.07 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 7 residues within 4Å: Chain A: L.24, D.40, T.43, R.87, H.89, M.123, Y.130 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.87, A:H.89 Water bridges: A:H.22, A:T.42, A:T.42

3 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: T.181, N.182, T.183, L.186 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.181, A:L.186 Water bridges: A:T.181 NA.3: 2 residues within 4Å: Chain A: E.116, Y.157 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.157 Water bridges: A:Y.157, A:T.231, A:T.231 NA.4: 1 residues within 4Å: Chain A: K.200 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Q. et al., Structure-guided functional characterization of DUF1460 reveals a highly specific NlpC/P60 amidase family. Structure (2014)

Release Date

2014-05-07

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein

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