- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x K: POTASSIUM ION(Non-covalent)
K.2: 6 residues within 4Å:- Chain A: T.42, A.43, T.45, Y.52, Y.97
- Ligands: K.9
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:A.43, A:Y.52, H2O.1
K.9: 3 residues within 4Å:- Chain A: T.45, K.84
- Ligands: K.2
No protein-ligand interaction detected (PLIP)K.11: 6 residues within 4Å:- Chain B: T.42, A.43, T.45, Y.52, Y.97
- Ligands: K.18
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:A.43, B:Y.52, H2O.7
K.18: 3 residues within 4Å:- Chain B: T.45, K.84
- Ligands: K.11
No protein-ligand interaction detected (PLIP)- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 2 residues within 4Å:- Chain A: H.12, R.16
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.16
GOL.4: 3 residues within 4Å:- Chain A: S.126, K.127, E.128
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.127, A:E.128
GOL.12: 2 residues within 4Å:- Chain B: H.12, R.16
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.16
GOL.13: 3 residues within 4Å:- Chain B: S.126, K.127, E.128
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.127, B:E.128
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 2 residues within 4Å:- Chain A: K.26, R.34
4 PLIP interactions:4 interactions with chain A- Water bridges: A:D.180, A:D.180
- Salt bridges: A:K.26, A:R.34
SO4.14: 2 residues within 4Å:- Chain B: K.26, R.34
4 PLIP interactions:4 interactions with chain B- Water bridges: B:D.180, B:D.180
- Salt bridges: B:K.26, B:R.34
- 2 x TYR: TYROSINE(Non-covalent)
TYR.6: 12 residues within 4Å:- Chain A: Y.39, G.41, A.43, L.72, A.74, H.77, V.152, Y.166, Q.170, D.173, Q.182, Q.188
13 PLIP interactions:12 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:Y.39, A:A.74
- Hydrogen bonds: A:Y.39, A:Y.39, A:Y.166, A:Q.170, A:Q.170, A:D.173, A:Q.188, Y.6
- Water bridges: A:A.43, A:A.43
- pi-Stacking: A:H.77
TYR.15: 12 residues within 4Å:- Chain B: Y.39, G.41, A.43, L.72, A.74, H.77, V.152, Y.166, Q.170, D.173, Q.182, Q.188
13 PLIP interactions:12 interactions with chain B, 1 Ligand-Ligand interactions- Hydrophobic interactions: B:Y.39, B:A.74
- Hydrogen bonds: B:Y.39, B:Y.39, B:Y.166, B:Q.170, B:Q.170, B:D.173, B:Q.188, Y.15
- Water bridges: B:A.43, B:A.43
- pi-Stacking: B:H.77
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sajish, M. et al., A human tRNA synthetase is a potent PARP1-activating effector target for resveratrol. Nature (2014)
- Release Date
- 2014-12-17
- Peptides
- Tyrosine--tRNA ligase, cytoplasmic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x K: POTASSIUM ION(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 2 x TYR: TYROSINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sajish, M. et al., A human tRNA synthetase is a potent PARP1-activating effector target for resveratrol. Nature (2014)
- Release Date
- 2014-12-17
- Peptides
- Tyrosine--tRNA ligase, cytoplasmic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A