SMTL ID : 4qde.1 (1 other biounit)

Dcps in complex with covalent inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: H.268, P.271, S.272, Y.273, H.277, H.279, R.294 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.272, A:S.272, A:S.272, A:Y.273 Salt bridges: A:H.268, A:H.277, A:H.279, A:R.294 PO4.3: 7 residues within 4Å: Chain B: H.268, P.271, S.272, Y.273, H.277, H.279, R.294 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.272, B:Y.273 Salt bridges: B:H.268, B:H.277, B:H.279, B:R.294 PO4.4: 6 residues within 4Å: Chain A: E.300 Chain B: H.296, N.304, H.311, Y.312, L.317 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.304, B:Y.312 Salt bridges: B:H.296, B:H.311

1 x 30S: 2-{[(2,4-diaminoquinazolin-5-yl)oxy]methyl}benzenesulfonic acid(Covalent)

30S.2: 16 residues within 4Å: Chain A: H.139, K.142, Y.143, W.175, I.179, E.185, R.188, I.203, P.204, D.205, L.206, I.219, Y.273 Chain B: F.108, N.110, Y.113 13 PLIP interactions: 10 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:W.175, A:L.206, A:L.206, B:Y.113, B:Y.113 Hydrogen bonds: A:R.188, A:P.204, A:D.205, A:L.206 Salt bridges: A:E.185, A:D.205 pi-Stacking: A:W.175, B:Y.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, S., Dcps in complex with covalent inhibitors. To be Published

Release Date

2015-05-13

Peptides

m7GpppX diphosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

m7GpppX diphosphatase

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