SMTL ID : 4qhd.1

Crystal structure of apo human APE1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: N.141, A.197, G.198, F.233, W.247, L.249 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.141, A:A.197 EDO.2: 4 residues within 4Å: Chain A: S.82, H.83, Q.84, Y.85 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.84, A:Y.85 Water bridges: A:Q.84 EDO.3: 4 residues within 4Å: Chain A: P.215, S.255, H.256, S.257 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.256, A:H.256, A:S.257, A:S.257 Water bridges: A:S.257 EDO.4: 5 residues within 4Å: Chain A: H.182, E.183, R.204, Q.205, G.208 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.183, A:G.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, H. et al., High-resolution crystal structures reveal plasticity in the metal binding site of apurinic/apyrimidinic endonuclease I. Biochemistry (2014)

Release Date

2014-11-12

Peptides

DNA-(apurinic or apyrimidinic site) lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA-(apurinic or apyrimidinic site) lyase

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