SMTL ID : 6mko.1

Crystallographic solvent mapping analysis of glycerol bound to APE1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: N.141, N.179, V.180, A.197, G.198, F.233, T.235, W.247, L.249 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.141, A:N.179 Water bridges: A:N.141, A:G.143 GOL.2: 4 residues within 4Å: Chain A: R.160, E.209, Q.212, A.213 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trilles, R. et al., Discovery of Macrocyclic Inhibitors of Apurinic/Apyrimidinic Endonuclease 1. J. Med. Chem. (2019)

Release Date

2019-01-30

Peptides

DNA-(apurinic or apyrimidinic site) lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA-(apurinic or apyrimidinic site) lyase

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