SMTL ID : 4qhx.1 (1 other biounit)

Crystal structure of a putative two-domain sugar hydrolase (BACCAC_02064) from Bacteroides caccae ATCC 43185 at 1.80 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: E.110, G.111 Ligand excluded by PLIP

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.326, G.330, W.332, W.395 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.332 Water bridges: A:E.390, A:E.390 Salt bridges: A:R.326 SO4.3: 6 residues within 4Å: Chain A: H.342, Q.349, Y.354, V.376, P.377, M.378 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.349, A:Y.354, A:V.376 Water bridges: A:H.342 Salt bridges: A:H.342 SO4.4: 2 residues within 4Å: Chain A: Y.57, K.84 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.57, A:K.84 SO4.5: 1 residues within 4Å: Chain A: K.328 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.328, A:K.328 Salt bridges: A:K.328 SO4.6: 4 residues within 4Å: Chain A: T.26, R.28, T.31, H.32 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.31, A:T.31 Water bridges: A:R.28 Salt bridges: A:R.28, A:H.32 SO4.7: 1 residues within 4Å: Chain A: N.80 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.80 SO4.8: 5 residues within 4Å: Chain A: S.143, H.145, Y.184, F.303, E.305 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.143 Water bridges: A:S.143 Salt bridges: A:H.145 SO4.9: 7 residues within 4Å: Chain A: A.149, L.150, P.151, R.334, L.335, T.336, D.337 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.150, A:T.336, A:T.336 Water bridges: A:T.336 SO4.10: 1 residues within 4Å: Chain A: N.76 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.76

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 6 residues within 4Å: Chain A: S.11, T.26, D.135, Y.136, R.139, P.309 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.11, A:T.26, A:R.139 Water bridges: A:S.11, A:E.310, A:E.310 GOL.12: 6 residues within 4Å: Chain A: F.319, T.359, K.360, D.361, R.363 Ligands: GOL.13 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.360, A:R.363 GOL.13: 6 residues within 4Å: Chain A: E.317, F.319, T.359, Y.365, K.367 Ligands: GOL.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.365, A:K.367 GOL.14: 4 residues within 4Å: Chain A: Q.355, F.372, N.373, E.374 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.355, A:N.373, A:E.374 Water bridges: A:N.373, A:N.373, A:N.373 GOL.15: 8 residues within 4Å: Chain A: G.321, N.322, R.334, D.361, N.362, R.363, T.387, G.388 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.322, A:R.334, A:N.362, A:T.387 Water bridges: A:R.334, A:T.387, A:K.389 GOL.16: 2 residues within 4Å: Chain A: R.196 Ligands: PEG.20 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.196, A:R.196 Water bridges: A:Q.241 GOL.17: 4 residues within 4Å: Chain A: F.133, S.134, D.135, Y.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.135, A:Y.136 Water bridges: A:S.11

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.18: 5 residues within 4Å: Chain A: F.180, G.181, Y.184, W.202, H.301 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.301 Water bridges: A:Y.184, A:Y.184 PEG.19: 4 residues within 4Å: Chain A: F.133, W.137, A.344, T.345 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.345 Water bridges: A:A.344 PEG.20: 3 residues within 4Å: Chain A: N.190, F.307 Ligands: GOL.16 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.140, A:N.190 Water bridges: A:R.140, A:Q.188, A:Q.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a hypothetical protein (BACCAC_02064) from Bacteroides caccae ATCC 43185 at 1.80 A resolution. To be published

Release Date

2014-07-23

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein

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