SMTL ID : 4qi4.2 (1 other biounit)

Dehydrogenase domain of Myriococcum thermophilum cellobiose dehydrogenase, MtDH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-trimer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.178, R.179, E.363 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain A: T.49, N.215, R.237, D.238, G.239 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 3 residues within 4Å: Chain B: N.178, R.179, E.363 No protein-ligand interaction detected (PLIP) NAG-NAG.15: 5 residues within 4Å: Chain B: T.49, N.215, R.237, D.238, G.239 No protein-ligand interaction detected (PLIP) NAG-NAG.27: 3 residues within 4Å: Chain C: N.178, R.179, E.363 No protein-ligand interaction detected (PLIP) NAG-NAG.28: 5 residues within 4Å: Chain C: T.49, N.215, R.237, D.238, G.239 No protein-ligand interaction detected (PLIP)

3 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.3: 34 residues within 4Å: Chain A: V.13, G.14, G.15, G.16, A.17, G.18, I.36, E.37, K.38, M.87, G.89, C.90, V.91, G.94, G.95, N.99, A.100, G.101, L.102, T.216, S.217, V.218, S.257, A.258, G.259, I.266, N.478, H.479, D.515, A.516, N.526, P.527, T.528, I.531 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:N.478 Hydrogen bonds: A:G.15, A:A.17, A:G.18, A:K.38, A:G.89, A:G.94, A:G.95, A:G.95, A:N.99, A:A.100, A:G.101, A:L.102, A:L.102, A:V.218, A:V.218, A:A.516, A:N.526, A:T.528, A:T.528, A:T.528 FAD.16: 34 residues within 4Å: Chain B: V.13, G.14, G.15, G.16, A.17, G.18, I.36, E.37, K.38, M.87, G.89, C.90, V.91, G.94, G.95, N.99, A.100, G.101, L.102, T.216, S.217, V.218, S.257, A.258, G.259, I.266, N.478, H.479, D.515, A.516, N.526, P.527, T.528, I.531 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:N.478 Hydrogen bonds: B:G.15, B:A.17, B:G.18, B:K.38, B:G.89, B:G.94, B:G.95, B:G.95, B:N.99, B:A.100, B:G.101, B:L.102, B:L.102, B:V.218, B:V.218, B:A.516, B:N.526, B:T.528, B:T.528, B:T.528 FAD.29: 34 residues within 4Å: Chain C: V.13, G.14, G.15, G.16, A.17, G.18, I.36, E.37, K.38, M.87, G.89, C.90, V.91, G.94, G.95, N.99, A.100, G.101, L.102, T.216, S.217, V.218, S.257, A.258, G.259, I.266, N.478, H.479, D.515, A.516, N.526, P.527, T.528, I.531 21 PLIP interactions: 21 interactions with chain C Hydrophobic interactions: C:N.478 Hydrogen bonds: C:G.15, C:A.17, C:G.18, C:K.38, C:G.89, C:G.94, C:G.95, C:G.95, C:N.99, C:A.100, C:G.101, C:L.102, C:L.102, C:V.218, C:V.218, C:A.516, C:N.526, C:T.528, C:T.528, C:T.528

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: E.275, E.279, N.294 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.294 NAG.17: 3 residues within 4Å: Chain B: E.275, E.279, N.294 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.294 NAG.30: 3 residues within 4Å: Chain C: E.275, E.279, N.294 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.294

27 x CD: CADMIUM ION(Non-covalent)

CD.5: 2 residues within 4Å: Chain A: D.117 Chain B: D.117 Ligand excluded by PLIP CD.6: 3 residues within 4Å: Chain A: K.219, E.234, K.286 Ligand excluded by PLIP CD.7: 6 residues within 4Å: Chain A: C.69, N.70, W.73, V.98, N.99, A.100 Ligand excluded by PLIP CD.8: 2 residues within 4Å: Chain A: F.153, H.183 Ligand excluded by PLIP CD.9: 5 residues within 4Å: Chain A: E.561 Chain B: E.561 Chain C: E.561 Ligands: CD.22, CD.35 Ligand excluded by PLIP CD.10: 2 residues within 4Å: Chain A: K.77, E.82 Ligand excluded by PLIP CD.11: 5 residues within 4Å: Chain A: K.493 Chain B: K.493 Chain C: K.493 Ligands: CD.24, CD.37 Ligand excluded by PLIP CD.12: 1 residues within 4Å: Chain A: E.56 Ligand excluded by PLIP CD.13: 1 residues within 4Å: Chain A: E.328 Ligand excluded by PLIP CD.18: 2 residues within 4Å: Chain B: D.117 Chain C: D.117 Ligand excluded by PLIP CD.19: 3 residues within 4Å: Chain B: K.219, E.234, K.286 Ligand excluded by PLIP CD.20: 6 residues within 4Å: Chain B: C.69, N.70, W.73, V.98, N.99, A.100 Ligand excluded by PLIP CD.21: 2 residues within 4Å: Chain B: F.153, H.183 Ligand excluded by PLIP CD.22: 5 residues within 4Å: Chain A: E.561 Chain B: E.561 Chain C: E.561 Ligands: CD.9, CD.35 Ligand excluded by PLIP CD.23: 2 residues within 4Å: Chain B: K.77, E.82 Ligand excluded by PLIP CD.24: 5 residues within 4Å: Chain A: K.493 Chain B: K.493 Chain C: K.493 Ligands: CD.11, CD.37 Ligand excluded by PLIP CD.25: 1 residues within 4Å: Chain B: E.56 Ligand excluded by PLIP CD.26: 1 residues within 4Å: Chain B: E.328 Ligand excluded by PLIP CD.31: 2 residues within 4Å: Chain A: D.117 Chain C: D.117 Ligand excluded by PLIP CD.32: 3 residues within 4Å: Chain C: K.219, E.234, K.286 Ligand excluded by PLIP CD.33: 6 residues within 4Å: Chain C: C.69, N.70, W.73, V.98, N.99, A.100 Ligand excluded by PLIP CD.34: 2 residues within 4Å: Chain C: F.153, H.183 Ligand excluded by PLIP CD.35: 5 residues within 4Å: Chain A: E.561 Chain B: E.561 Chain C: E.561 Ligands: CD.9, CD.22 Ligand excluded by PLIP CD.36: 2 residues within 4Å: Chain C: K.77, E.82 Ligand excluded by PLIP CD.37: 5 residues within 4Å: Chain A: K.493 Chain B: K.493 Chain C: K.493 Ligands: CD.11, CD.24 Ligand excluded by PLIP CD.38: 1 residues within 4Å: Chain C: E.56 Ligand excluded by PLIP CD.39: 1 residues within 4Å: Chain C: E.328 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, T.C. et al., Structural basis for cellobiose dehydrogenase action during oxidative cellulose degradation. Nat Commun (2015)

Release Date

2015-07-15

Peptides

Cellobiose dehydrogenase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Cellobiose dehydrogenase

Related Entries With Identical Sequence