SMTL ID : 4qip.1

Crystal Structure of Major Birch Pollen Allergen Bet v 1 isoform a in complex with Sodium Dodecyl Sulfate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x SDS: DODECYL SULFATE(Non-covalent)

SDS.1: 8 residues within 4Å: Chain A: Q.36, F.58, F.62, P.63, F.64, A.135, M.139, T.142 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.58, A:F.58, A:F.62, A:F.62, A:F.64, A:F.64, A:T.142 Water bridges: A:A.37, A:A.37 SDS.2: 13 residues within 4Å: Chain A: T.9, F.22, D.27, F.30, K.54, I.56, D.69, Y.81, Y.83, I.102, K.137, G.140, E.141 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.9, A:F.22, A:F.30, A:Y.81 Salt bridges: A:K.54

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: K.134, E.138 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grutsch, S. et al., Ligand binding modulates the structural dynamics and compactness of the major birch pollen allergen. Biophys.J. (2014)

Release Date

2015-01-14

Peptides

Major pollen allergen Bet v 1-A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Major pollen allergen Bet v 1-A

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