- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-trimer
- Ligands
- 7 x MN: MANGANESE (II) ION(Non-covalent)
- 3 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
AKG.2: 12 residues within 4Å:- Chain A: I.55, H.93, L.95, I.103, H.106, D.108, Y.150, H.162, R.182, S.184, R.188
- Ligands: MN.1
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:I.103
- Hydrogen bonds: A:Y.150, A:S.184
- Water bridges: A:Y.150, A:R.182, A:R.188, A:R.188, A:R.188, A:R.188
- Salt bridges: A:H.93, A:H.106, A:R.182, A:R.188
AKG.5: 13 residues within 4Å:- Chain B: I.55, H.93, L.95, I.103, H.106, D.108, Y.150, H.162, R.182, S.184, I.186, R.188
- Ligands: MN.4
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:I.103, B:I.186
- Hydrogen bonds: B:Y.150, B:Y.150, B:S.184
- Water bridges: B:S.184, B:R.188, B:R.188, B:R.188, B:R.188
- Salt bridges: B:H.93, B:H.106, B:R.182, B:R.188
AKG.9: 13 residues within 4Å:- Chain C: I.55, H.93, L.95, I.103, H.106, D.108, Y.150, H.162, R.182, S.184, I.186, R.188
- Ligands: MN.8
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:I.103, C:I.186
- Hydrogen bonds: C:Y.150, C:S.184
- Water bridges: C:Y.150, C:S.184, C:R.188, C:R.188, C:R.188, C:R.188
- Salt bridges: C:H.93, C:H.106, C:R.182, C:R.188
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, G. et al., The atomic resolution structure of human AlkB homolog 7 (ALKBH7), a key protein for programmed necrosis and fat metabolism. J.Biol.Chem. (2014)
- Release Date
- 2014-08-20
- Peptides
- Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-trimer
- Ligands
- 7 x MN: MANGANESE (II) ION(Non-covalent)
- 3 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, G. et al., The atomic resolution structure of human AlkB homolog 7 (ALKBH7), a key protein for programmed necrosis and fat metabolism. J.Biol.Chem. (2014)
- Release Date
- 2014-08-20
- Peptides
- Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C