SMTL ID : 4qkf.3 (2 other biounits)

Crystal structure of human ALKBH7 in complex with N-oxalylglycine and Mn(II)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.106, D.108, H.162 Ligands: OGA.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.106, A:D.108, A:D.108, A:H.162 MN.3: 1 residues within 4Å: Chain A: E.174 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.174

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.2: 13 residues within 4Å: Chain A: I.55, H.93, L.95, I.103, H.106, D.108, Y.150, H.162, R.182, S.184, I.186, R.188 Ligands: MN.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.184 Water bridges: A:Y.150, A:R.182 Salt bridges: A:H.93, A:H.106, A:R.182, A:R.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, G. et al., The atomic resolution structure of human AlkB homolog 7 (ALKBH7), a key protein for programmed necrosis and fat metabolism. J.Biol.Chem. (2014)

Release Date

2014-08-20

Peptides

Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial

Related Entries With Identical Sequence