SMTL ID : 4qqd.1 (1 other biounit)

Crystal Structure of tandem tudor domains of UHRF1 in complex with a small organic molecule

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

monomer

Ligands

2 x 36X: 4-methyl-2,3,4,5,6,7-hexahydrodicyclopenta[b,e]pyridin-8(1H)-imine(Non-covalent)

36X.1: 7 residues within 4Å: Chain A: D.18, W.27, E.29, R.85, M.100, W.114, F.154 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.27, A:W.114, A:W.114, A:W.114, A:F.154 Water bridges: A:E.29 pi-Stacking: A:W.114, A:W.114 pi-Cation interactions: A:R.85 36X.2: 6 residues within 4Å: Chain A: D.21, M.24, F.28, Y.64, Y.67, F.113 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.28, A:F.28, A:Y.64, A:Y.67, A:F.113 Hydrogen bonds: A:D.21 pi-Stacking: A:F.28

2 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 6 residues within 4Å: Chain A: R.129, E.130, L.131, R.146, I.147, V.150 No protein-ligand interaction detected (PLIP) UNX.4: 2 residues within 4Å: Chain A: R.121, R.123 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., A small molecule antagonist of SMN disrupts the interaction between SMN and RNAP II. Nat Commun (2022)

Release Date

2014-08-06

Peptides

E3 ubiquitin-protein ligase UHRF1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase UHRF1

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