SMTL ID : 4qqd.2 (1 other biounit)

Crystal Structure of tandem tudor domains of UHRF1 in complex with a small organic molecule

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

monomer

Ligands

1 x 36X: 4-methyl-2,3,4,5,6,7-hexahydrodicyclopenta[b,e]pyridin-8(1H)-imine(Non-covalent)

36X.1: 7 residues within 4Å: Chain A: D.18, W.27, E.29, R.85, M.100, W.114, F.154 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.27, A:E.29, A:W.114, A:W.114, A:W.114 Water bridges: A:W.27 pi-Stacking: A:W.114, A:W.114 pi-Cation interactions: A:R.85

3 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 3 residues within 4Å: Chain A: F.149, V.150, D.151 No protein-ligand interaction detected (PLIP) UNX.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: Q.91, L.93, E.94 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., A small molecule antagonist of SMN disrupts the interaction between SMN and RNAP II. Nat Commun (2022)

Release Date

2014-08-06

Peptides

E3 ubiquitin-protein ligase UHRF1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase UHRF1

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