SMTL ID : 4qte.1 (1 other biounit)

Structure of ERK2 in complex with VTX-11e, 4-{2-[(2-CHLORO-4-FLUOROPHENYL)AMINO]-5-METHYLPYRIMIDIN-4-YL}-N-[(1S)-1-(3-CHLOROPHENYL)-2-HYDROXYETHYL]-1H-PYRROLE-2-CARBOXAMIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

22 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: N.83, Y.129, Y.132, Q.133, R.136 Ligand excluded by PLIP EDO.2: 5 residues within 4Å: Chain A: K.301, R.302, I.303, E.304, Q.307 Ligand excluded by PLIP EDO.3: 2 residues within 4Å: Chain A: Y.129, Y.317 Ligand excluded by PLIP EDO.4: 3 residues within 4Å: Chain A: N.124, N.282, D.284 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain A: S.209, P.299, H.300 Ligand excluded by PLIP EDO.6: 6 residues within 4Å: Chain A: L.117, K.118, E.221, N.225, R.226, P.227 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: T.111, N.159, T.160, C.162 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain A: Y.114, K.152, S.154, T.191 Ligands: EDO.15 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: H.62, Q.63, T.64 Ligand excluded by PLIP EDO.10: 3 residues within 4Å: Chain A: V.174, K.331, F.332 Ligand excluded by PLIP EDO.11: 7 residues within 4Å: Chain A: H.121, L.122, I.127, M.222, L.223, S.224, N.225 Ligand excluded by PLIP EDO.12: 2 residues within 4Å: Chain A: Q.316, Y.317 Ligand excluded by PLIP EDO.13: 3 residues within 4Å: Chain A: I.325, A.326, E.327 Ligand excluded by PLIP EDO.14: 1 residues within 4Å: Chain A: E.306 Ligand excluded by PLIP EDO.15: 3 residues within 4Å: Chain A: K.152, T.191 Ligands: EDO.8 Ligand excluded by PLIP EDO.16: 1 residues within 4Å: Chain A: K.208 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain A: S.247, L.265, L.266, L.268, P.269, H.270 Ligand excluded by PLIP EDO.18: 3 residues within 4Å: Chain A: P.269, H.270, K.271 Ligand excluded by PLIP EDO.19: 1 residues within 4Å: Chain A: S.267 Ligand excluded by PLIP EDO.20: 1 residues within 4Å: Chain A: W.193 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain A: E.315, Q.316, Y.318 Ligand excluded by PLIP EDO.22: 6 residues within 4Å: Chain A: L.117, K.118, T.119, Q.120, H.121, N.225 Ligand excluded by PLIP

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.23: 4 residues within 4Å: Chain A: R.192, R.195, H.233, Y.234 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.192, A:R.195, A:Y.234 Salt bridges: A:R.192, A:R.195 SO4.24: 5 residues within 4Å: Chain A: D.284, K.286, P.312, Y.313, Q.316 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.124, A:D.284, A:Y.313 Water bridges: A:K.286, A:Q.316 Salt bridges: A:K.286 SO4.25: 4 residues within 4Å: Chain A: R.78, Y.140, A.326, E.327 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.140, A:E.327 Salt bridges: A:R.78 SO4.26: 4 residues within 4Å: Chain A: V.15, R.16, S.30, Y.31 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.31 Salt bridges: A:R.16 SO4.29: 3 residues within 4Å: Chain A: R.149, L.171, R.173 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:L.171 Water bridges: A:R.71, A:R.149, A:V.189, A:V.189 Salt bridges: A:R.149, A:R.173

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.27: 3 residues within 4Å: Chain A: H.233, Y.234, L.235 Ligand excluded by PLIP CL.28: 4 residues within 4Å: Chain A: N.202, I.256, I.257, N.258 Ligand excluded by PLIP

1 x 390: 4-{2-[(2-chloro-4-fluorophenyl)amino]-5-methylpyrimidin-4-yl}-N-[(1S)-1-(3-chlorophenyl)-2-hydroxyethyl]-1H-pyrrole-2-carboxamide(Non-covalent)

390.30: 23 residues within 4Å: Chain A: I.32, E.34, G.35, A.36, Y.37, G.38, M.39, V.40, A.53, K.55, I.57, Q.106, D.107, L.108, M.109, E.110, T.111, D.112, K.115, N.155, L.157, C.167, D.168 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.32, A:V.40, A:A.53, A:I.57, A:L.157 Hydrogen bonds: A:M.109, A:M.109 Water bridges: A:K.152, A:K.152, A:K.152, A:K.152, A:S.154, A:S.154, A:S.154, A:D.168 pi-Cation interactions: A:K.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., A unique inhibitor binding site in ERK1/2 is associated with slow binding kinetics. Nat.Chem.Biol. (2014)

Release Date

2014-07-23

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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