SMTL ID : 4qv2.1

Unliganded crystal structure of Feline Norovirus P Domain co-crystallized with HBGA A-trisaccharide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

homo-dimer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: L.48, L.49, G.50, T.52, Q.125, L.129 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.52 Water bridges: A:G.50, A:G.50, A:G.50, A:D.124 EDO.2: 7 residues within 4Å: Chain A: V.137, Y.157, R.179, E.200, R.205, P.206, W.249 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.179, A:R.179 EDO.3: 6 residues within 4Å: Chain B: L.48, L.49, G.50, T.52, Q.125, L.129 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.52 Water bridges: B:G.50, B:G.50, B:G.50, B:D.124 EDO.4: 8 residues within 4Å: Chain A: L.153 Chain B: V.139, G.140, T.141, D.155, A.156, I.197, W.249 2 PLIP interactions: 2 interactions with chain B Water bridges: B:G.140, B:W.249 EDO.5: 7 residues within 4Å: Chain B: Y.97, V.137, Y.157, R.179, E.200, P.206, W.249 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.179, B:R.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, B.K. et al., Structural analysis of a feline norovirus protruding domain. Virology (2015)

Release Date

2014-11-19

Peptides

VP1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

VP1

Related Entries With Identical Sequence