SMTL ID : 4r06.1

Crystal Structure of SR2067 bound to PPARgamma

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

homo-dimer

Ligands

1 x 3E7: 1-(naphthalen-1-ylsulfonyl)-N-[(1S)-1-phenylpropyl]-1H-indole-5-carboxamide(Non-covalent)

3E7.1: 20 residues within 4Å: Chain A: I.77, F.78, G.80, C.81, Q.82, R.84, S.85, H.119, I.122, Y.123, L.126, V.135, L.136, I.137, L.149, M.160, H.245, L.249, Y.269 Ligands: SO4.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.77, A:F.78, A:Q.82, A:R.84, A:R.84, A:I.122, A:I.122, A:I.137, A:L.149, A:L.249, A:L.249, A:Y.269 Hydrogen bonds: A:S.85, A:S.85, A:Y.123 pi-Stacking: A:H.245

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: R.84, I.122, M.125, L.126, L.129 Ligands: 3E7.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.91 Salt bridges: A:R.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van Marrewijk, L.M. et al., SR2067 Reveals a Unique Kinetic and Structural Signature for PPAR gamma Partial Agonism. Acs Chem.Biol. (2016)

Release Date

2016-01-27

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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