SMTL ID : 4r09.1 (1 other biounit)

Crystal structure of human TLR8 in complex with ORN06S

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.62 Å
Oligo State
homo-dimer
Ligands
2 x URI: URIDINE(Non-covalent)
2 x 06S: O-[(2R,3S,4R,5R)-5-(2-AMINO-6-OXO-3,6-DIHYDRO-9H-PURIN-9-YL)-2-({[(S)-({(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-4-HYDROXY-2-[(THIOPHOSPHONOOXY)METHYL]TETRAHYDROFURAN-3-YL}OXY)(SULFANYL)PHOSPHORYL]OXY}METHYL)-4-HYDROXYTETRAHYDROFURAN-3-YL] DIHYDROGEN (S)-PHOSPHOROTHIOATE(Non-covalent)
2 x UPT: 1-[(2R,3AR,4R,6R,6AR)-2-HYDROXY-6-(HYDROXYMETHYL)-2-SULFIDOTETRAHYDROFURO[3,4-D][1,3,2]DIOXAPHOSPHOL-4-YL]PYRIMIDINE-2,4(1H,3H)-DIONE(Non-covalent)
1 x NAG- NAG- BMA- MAN- MAN: SUGAR (5-MER)
4 x NAG- NAG: SUGAR (2-MER)(Post Translational Modification)
2 x NAG: SUGAR (N-ACETYL-D-GLUCOSAMINE)(Post Translational Modification)
1 x NAG- NAG- BMA: SUGAR (3-MER)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Tanji, H. et al., Toll-like receptor 8 senses degradation products of single-stranded RNA. Nat.Struct.Mol.Biol. (2015)
Release Date
2015-01-14
Peptides
Toll-like receptor 8: AB
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B

Toll-like receptor 8

Related Entries With Identical Sequence

3w3g.1 | 3w3j.1 | 3w3k.1 | 3w3l.1 | 3w3l.2 | 3w3m.1 | 3w3n.1 | 3wn4.1 | 3wn4.2 | 4qbz.1 | 4qc0.1 | 4r07.1 | 4r07.2 | 4r08.1 | 4r08.2 | 4r09.2 | 4r0a.1 | 4r6a.1 | 5awa.1 | 5awb.1 | 5awc.1 | 5awc.2 | 5awd.1 | 5az5.1 | 5az5.2 | 5wyx.1 | 5wyz.1 | 5z14.1 | 5z15.1 | 6kya.1