- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.48 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.2: 15 residues within 4Å:- Chain A: G.214, A.215, E.216, P.217, N.236, S.237, F.238, G.239, M.240, T.241, D.305, R.329, I.335, N.340
- Ligands: EDO.10
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:A.215, A:N.236, A:S.237, A:G.239, A:T.241, A:T.241, A:D.305, A:R.329, A:N.340
- Water bridges: A:T.143, A:T.143, A:T.143, A:T.241, A:N.340
- pi-Stacking: A:F.238
AMP.14: 15 residues within 4Å:- Chain B: S.94, G.214, A.215, E.216, P.217, N.236, S.237, F.238, G.239, M.240, T.241, D.305, I.326, R.329, K.425
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:A.215, B:S.237, B:G.239, B:T.241, B:D.305, B:R.329, B:K.425
- Water bridges: B:S.94, B:N.236, B:I.326
- Salt bridges: B:K.425
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.3: 5 residues within 4Å:- Chain A: K.129, G.156, C.157, L.158
- Chain B: G.88
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:C.157
NA.15: 6 residues within 4Å:- Chain A: K.85, G.88
- Chain B: K.129, G.156, C.157, L.158
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.156
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 6 residues within 4Å:- Chain A: N.32, A.35, F.44, I.49, T.50, G.51
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.32
EDO.5: 1 residues within 4Å:- Chain A: K.46
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.46
EDO.6: 8 residues within 4Å:- Chain A: M.71, R.72, Y.75, P.76, L.79, P.101, V.103, M.296
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.101
- Water bridges: A:L.79
EDO.7: 6 residues within 4Å:- Chain A: Q.23, L.57, E.262, Y.265, L.266, V.267
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.23, A:E.262, A:V.267
EDO.8: 3 residues within 4Å:- Chain A: N.166, S.167, R.191
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.166, A:S.167, A:S.167, A:R.191
EDO.9: 2 residues within 4Å:- Chain A: I.33, E.294
No protein-ligand interaction detected (PLIP)EDO.10: 8 residues within 4Å:- Chain A: K.68, M.240, E.242, Y.301, T.303, R.329, N.340
- Ligands: AMP.2
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.68, A:Y.301, A:T.303, A:R.329, A:N.340
EDO.11: 4 residues within 4Å:- Chain A: S.136, A.164, G.165, Y.188
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.136, A:G.165
EDO.12: 7 residues within 4Å:- Chain A: K.29, T.30, I.33, L.291, D.292, R.293, E.294
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.30, A:H.109, A:D.292
- Water bridges: A:R.293
EDO.16: 2 residues within 4Å:- Chain B: W.7, Y.123
1 PLIP interactions:1 interactions with chain B- Water bridges: B:W.7
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joint Center for Structural Genomics (JCSG), Crystal structure of a Hypothetical Acyl-CoA ligase (BT_0428) from Bacteroides thetaiotaomicron VPI-5482 at 2.48 A resolution. To be published
- Release Date
- 2014-08-27
- Peptides
- Phenylacetate-coenzyme A ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.48 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joint Center for Structural Genomics (JCSG), Crystal structure of a Hypothetical Acyl-CoA ligase (BT_0428) from Bacteroides thetaiotaomicron VPI-5482 at 2.48 A resolution. To be published
- Release Date
- 2014-08-27
- Peptides
- Phenylacetate-coenzyme A ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B